PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG447800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 131aa    MW: 15647.7 Da    PI: 8.8179
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG447800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR178.51.3e-2422113190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 
                          +fYn+YAk  GFsvr+++ +    ++e t r+fvCs+eg+r+e++ k ++k+r++r+ tr gC a+l++ +++ +g+w+v+++  eHnH+
  Pavir.7NG447800.1.p  22 QFYNNYAKGKGFSVRRDYCEWDIGHNERTLRHFVCSCEGFRKEKELKrENKKRKPRNITRFGCPARLVIARDQnTGQWHVKDFICEHNHP 111
                          6*********************999999*************9998775789999*****************999***************9 PP

                 FAR1  89 la 90 
                          ++
  Pavir.7NG447800.1.p 112 MV 113
                          97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-2322113IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MPGLEYNLVI SKVFDDEEQG YQFYNNYAKG KGFSVRRDYC EWDIGHNERT LRHFVCSCEG  60
FRKEKELKRE NKKRKPRNIT RFGCPARLVI ARDQNTGQWH VKDFICEHNH PMVEQDLACL  120
LRSHRRIRDE *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16173RKEKELKRENKKR
26175RKEKELKRENKKRKP
36674LKRENKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461640.12e-65hypothetical protein SORBIDRAFT_02g005860
TrEMBLC5XCK82e-65C5XCK8_SORBI; Putative uncharacterized protein Sb02g005860
STRINGSb02g005860.16e-65(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2449976
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-16FAR1-related sequence 5